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(Stroke. 2001;32:950.)
© 2001 American Heart Association, Inc.
Original Contributions |
From the Departments of Neurology (M.A.J., P.M., S.S., M.C.), Radiology, Medical Image Analysis Research (M.A.J., H.S-Z., A.G., R.H., D.J.P), and Neuroradiology (S.P.), Henry Ford Health Sciences Center, Detroit, Mich; Department of Electrical and Computer Engineering, University of Tehran (Iran) (H.S-Z.); Department of Physics, Oakland University, Rochester, Mich (M.A.J., M.C.); and Department of Radiology, The Johns Hopkins University School of Medicine, Baltimore, Md (M.A.J.).
Correspondence to Michael Chopp, PhD, Department of Neurology, Center for Stroke Research, Henry Ford Hospital E&R 3056, 2799 W Grand Blvd, Detroit, MI 48202. E-mail chopp{at}neuro.hfh.edu
| Abstract |
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MethodsMR
parameters diffusion-, T2-, and T1-weighted imaging (DWI,
T2WI, and T1WI, respectively) were obtained from 10 patients at 3 time
points (30 studies) after stroke: acute (
12 hours), subacute (3
to 5 days), and chronic (3 months). The National Institutes of Health
Stroke Scale (NIHSS) was measured, and volumes were obtained from the
ISODATA, DWI, and T2WI maps on patients at each time
point.
ResultsThe acute (
12
hours) multiparametric ISODATA volume was significantly
correlated with the acute (
12 hours) DWI
(r=0.96,
P<0.05; n=10) and chronic (3
months) T2WI volume (r=0.69,
P<0.05; n=10). The
ISODATA-defined tissue regions exhibited MR indices consistent
with ischemic and/or infarcted tissue at each time point. The
acute (
12 hours) multiparametric ISODATA volumes were
significantly correlated
(r=0.82,
P<0.009; n=10) with the
final NIHSS score. In comparison, the acute (
12 hours) DWI volumes
were less correlated (r=0.77,
P<0.05; n=10) and T2WI volume
(
12h) exhibited a marginal correlation
(r=0.66,
P<0.05; n=10) with the final
NIHSS score.
ConclusionsThe integrated ISODATA approach to tissue segmentation and classification discriminated abnormal from normal tissue at each time point. The ISODATA volume was significantly correlated with the current MR standards used in the clinical setting and the 3-month clinical status of the patient.
Key Words: cerebral ischemia, focal diagnostic imaging diffusion imaging magnetic resonance imaging signal processing, computer assisted, ISODATA stroke, acute stroke classification
| Introduction |
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T2- and T1-weighted imaging (T2WI and T1WI, respectively) are part of the standard protocol for stroke imaging. A typical T2WI sequence obtained after stroke includes a proton densityweighted image and a T2WI. At later times after stroke, T2WI is a marker of vasogenic edema and is considered the diagnostic "gold standard" in the clinical setting for identification of cerebral infarction.9 10 11 12 Similarly, T1WI reflects vasogenic edema within the ischemic brain.13 14 15
In clinical practice, DWI, T2WI, and T1WI are often acquired during acute stroke, and integration of these MRI data may provide complementary information about the status of the tissue. Therefore, the introduction of an objective computerized segmentation of the MRI would assist in the identification and classification of brain tissue. Specifically, in this study we present unsupervised segmentation of stroke using the Iterative Self-Organizing Data Analysis Technique (ISODATA) method of postprocessing analysis.16 17 18 Objective computerized segmentation of multiparametric MRI has not been used to identify and classify ischemic tissue damage over time in the clinical setting after stroke.
This study presents the application of a novel model of
tissue characterization using the angular separation of tissue
signature vectors from the segmentation of multiparametric
MRI.17 19 This
model was validated in the experimental setting of cerebral
ischemia.17 19
We test the utility of this approach to identify ischemic
tissue in clinical stroke. To this end, segmented volumes of
ischemic tissue damage were compared with quantitative volumes
of the DWI, apparent diffusion coefficient of water (ADC), and T2WI
maps from acute (
12 hours) to chronic (3 months) times after stroke
and compared with the neurological outcome of the patient as defined by
the National Institutes of Health Stroke Scale (NIHSS) at each time
point.
| Subjects and Methods |
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MR Image Preprocessing and
Analysis
MR image analysis was performed with a SUN
UltraSPARC2 workstation (Sun Microsystems Inc). MRI data were processed
with Eigentool image analysis
software.20 21 22 23 24
Eigentool has a comprehensive set of functions for displaying,
restoring, enhancing, and analyzing images. The complete toolbox
consists of image analysis algorithms and advanced functions
such as morphological image operators, registration, and warping
methods.25
After reconstruction, preprocessing was performed on the MR data. Preprocessing consisted of subimaging and noise reduction. Subimaging of the intracranial volume was done with the use of thresholding and morphological operations to segment the image background, skull, and scalp from brain tissue.26 Finally, the images were restored with the use of a nonlinear restoration filter that reduces white noise while preserving edges and partial volume effects.27 Maps of the trace ADC and T2 were created for each time point using a least-squares fit from the slope of the signal intensity on a pixel-by-pixel basis.
Coregistration and Warping
Coregistration and warping of the MR data were
accomplished by a previously reported 2-step
methodology.25 28
This method consists of a modified head and hat surface-based
registration algorithm that registers the temporal MRI to a reference
MRI (acute T2WI), followed by nonlinear thin plate spline warping by
deformable contours to compensate for distortions between the T2WI and
DWI. In this study, for registration and warping, T2 was used as the
head data set with the other temporal MRI as the hat data set. After
coregistration, warping was performed on the DWI to exactly match the
reference
T2WI.28
MRI Data Analysis
The ISODATA Technique
The ISODATA technique is an unsupervised segmentation
method related to the K-means algorithm with additional splitting and
merging steps that allow for the adjustment of cluster centers and
their number.29 The ability
to adjust the number of clusters is the main advantage of the ISODATA
method because it requires no initial training or a priori
knowledge of the exact number of clusters (tissue classes) before
segmentation. The modified ISODATA algorithm consists of 4 main steps
that are summarized as follows: (1) Clustering parameters
are put into the program. (2) MR data are partitioned into random
clusters. (3) The pixels are grouped into clusters the lie closest to
each other, as defined by the intra-Euclidean distance (the clusters
and cluster centers are vectors). Inter-Euclidean distances are
calculated between pixel vectors and cluster centers. (4) Splitting and
merging of the clusters are performed on the basis of intra- and
inter-Euclidean distances computed. Steps 3 and 4 are repeated until
the algorithm converges or reaches the maximum number of iterations.
For a complete description, refer to the companion article (part 1) in
this issue of
Stroke.19
The MRI data set used in the ISODATA model consists of 2
T2WI (TE=30, 90 ms), 1 T1WI, and 2 DWI
(b=600, 1000
s/mm2). These MR images were selected
because each parameter provides different contrast between
tissue types during the evolution of stroke, which leads to better
separation of the tissue classes and increases the likelihood of tissue
class discrimination. The selected MR data set allows correlation with
animal experiments conducted in our
laboratory.17 By integrating
these parameters into a 5-dimensional (number of MR images)
feature space, the volume of tissue damage can be determined by
computer-assisted diagnosis independently of
time.17 18 A
representative MR data set used in the ISODATA model is
shown in
Figure 1
. Typical signature vectors used on the MR data set
are demonstrated in
Figure 2
.
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Volume and Quantitative MRI
Measurements
Lesion volumes from each patient were obtained from a
DWI (b=1000
s/mm2) and a T2 map. The volume measurements
were accomplished by placing a region of interest (ROI) within the area
of signal intensity abnormality on the DWI and T2 map. Statistics (mean
and SD) were obtained from the gray level values within the ROI. The
DWI and T2 images were thresholded at the 95% CI to determine the area
of signal abnormality. The parametric outline of increased
signal intensity from the DWI was confirmed by a neuroradiologist
(S.P.) blinded to the ISODATA segmentation. These DWI volumes were
overlaid onto the ADC map to obtain quantitative values. Further
editing was done to remove any sulci or cerebrospinal fluid present
underneath the ROI that would have increased the ADC value.
Volume measurements similar to those described above were performed on
the T2 map. Volume analysis was performed on the
multiparametric ISODATA segmented ischemic regions
using the regions of abnormal and normal tissue defined by angular
separation between the different tissue
types.17 Total lesion
volumes were measured by summing the number of pixels from each region
in each slice defined by the ISODATA angle model within the
ischemic lesion and multiplying by the slice
thickness.
Comparisons between the ISODATA, acute (
12 hours) DWI, and
chronic (3 months) T2 map volumes were performed. Correlation between
the ISODATA volume and clinical outcome, as defined by the NIHSS, was
obtained. The NIHSS evaluation was completed (P.M., S.S.) before the
ISODATA segmentation by investigators blinded to the ISODATA
segmentation. Intrareliability and interreliability measurements with
the use of ISODATA have been previously
reported.16 30
In addition, the defined ISODATA ROIs of ischemic regions used for volume measurements were overlaid onto the ADC and T2 maps to obtain quantitative measurements. Similar ROI analysis was performed for normal tissue by reflecting the ROI around the vertical axis. The MR estimates of ADC and T2 from the ischemic lesion were normalized to the homologous, noninvolved contralateral hemisphere and expressed as ratios of ADC (ADCr) and T2 (T2r), respectively.
Statistical Analysis
Paired t
tests were used to determine statistical significance between the
ISODATA volumes and the DWI and T2WI volumes. Linear regression
analysis was performed to test the correlation between the
volume measurements of ISODATA, DWI, and T2 maps. All
parametric map values are presented as mean±SD.
Statistical significance was assigned for
P<0.05.
| Results |
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12 hours) with a right hemispheric infarct extending from
the frontal to the occipital lobe, and she had no therapeutic
intervention. The multiparametric ISODATA segmented several
different regions of ischemic tissue damage and distinguished
an old infarction on the left frontal lobe near the
inferior frontal gyrus. These different regions of tissue
damage were not visualized on the DWI, ADC, and T2 maps. However, the
old infarct was clearly visualized on the ADC and T2 maps as a
hyperintense signal in the inferior frontal gyrus region.
Within 3 to 5 days, the ischemic region of tissue damage grew
to encompass most of the right hemisphere, including the basal ganglia.
The multiparametric ISODATA segmentation showed recruitment of
new areas of ischemic damage as distinct tissue classes. These
new areas of infarction were seen on the MR images; however, the
different characteristic tissue classes were not clearly demonstrated.
At the chronic time point (3 months), the ischemic tissue
damage was noted on all the MR and ISODATA images. The
multiparametric ISODATA approach clearly segmented the lesion
into different components, which were not obvious from the DWI, ADC,
and T2 maps.
|
|
In all patients, the average angular separation of abnormal
and normal tissue was 9.0±3.0° (range, 4.2° to 12.5°) at the
acute phase of stroke (
12 hours after ictus). The angular separation
between abnormal and normal tissue continued to increase to
13.2±2.4° (range, 9.6° to 17.8°) at subacute time points and
to 13.1±2.9° (range, 10.7° to 19.5°) at chronic time points. The
ISODATA segmentation demonstrated recruitment of new and different
tissue classes within the volume of ischemic tissue damage, as
shown in
Figures 3
and 4
at all time points.
The patients demographic data, time to MRI, angular
measurements, infarct volumes, clinical information, and NIHSS scores
at each time point are summarized in
Table 1![]()
. The ISODATA-segmented ischemic tissue
volumes had significant correlation with the MRI-defined volumes at
each time point. The acute (
12 hours) multiparametric ISODATA
volume exhibited excellent correlation
(r=0.96,
P<0.05; n=10)
with the acute DWI volume. Moreover, the early (
12 hours) ISODATA
volume demonstrated excellent correlation
(r=0.69,
P<0.05; n=10) with the 3-month
infarct volume defined by the T2 map. The chronic (3 months) ISODATA
volume exhibited significant correlation with the 3-month volume
defined by the T2 map (r=0.96,
P<0.05; n=10).
|
|
MR indices of ADCr and
T2r are shown in
Table 2
. Acutely (
12 hours), the average
ADCr was decreased (0.73;
P<0.05; n=10) in all patients,
with a corresponding increased T2r (1.17;
P<0.05; n=10). Within 3 to 5
days after stroke, the mean ADCr was decreased
(0.72; P<0.05; n=10) in all
patients; however, in 1 patient the ADCr was
increased over unity (1.12). The average T2r
values continued to increase (1.48;
P<0.05; n=10). At 3 months,
both the mean ADCr (1.84;
P<0.05; n=10) and
T2r (1.70;
P<0.05; n=10) were elevated
above normal. The temporal evolutions of ADCr
and T2r values from the ISODATA volumes were
consistent with MR indices of ischemic tissue damage at
each time point.
|
Table 3
summarizes comparisons between the ISODATA,
DWI, and T2WI volumes with the NIHSS score at each time point. The
acute (
12 hours) multiparametric ISODATA volume had superior
correlation (r=0.82,
P<0.009; n=10) with
the 3-month NIHSS score, outperforming both the acute (
12 hours) DWI
and T2 volumes at this time point. The acute (
12 hours) DWI volume
demonstrated good correlation
(r=0.77,
P<0.05; n=10); however, the
acute (
12 hours) T2 volume exhibited marginal correlation
(r=0.66,
P<0.05; n=10) with the 3-month
NIHSS score.
|
| Discussion |
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The average angular separations between abnormal and normal
tissue types were similar to the experimental results in a rat model of
cerebral ischemia.19
In those reports, there was a clear tissue classification into normal
and different gradations of abnormal tissue characteristics with the
use of the angle model; however, the interpretation of tissue
classifications in animals should be tempered with the knowledge that
the progression of ischemic tissue damage varies over species.
This initial clinical study demonstrates that the angular separation
between abnormal and normal tissue is useful in defining the volume of
tissue damage and that the volume of tissue damage is highly correlated
with the initial (
12 hours) and final (3 months) clinical status of
the patients.
The MR parameters used in this study were based
on our experimental results in a model of cerebral
ischemia.19 In these
studies it was demonstrated that the combined MR data set consisting of
T2WI, T1WI, and DWI used in the ISODATA segmentation was highly
correlated with the histological status of the tissue.
Since histological specimens are not routinely
available in the clinical setting, we selected the functional outcome
of the patient, as defined by the NIHSS score, to test the ISODATA
model. The heterogeneous tissue regions segmented by the
multiparametric ISODATA methodology exhibited the
characteristics of evolving cerebral ischemia at each time
point.3 5 6
Acutely (
12 hours), the average ADCr was
decreased in all the patients studied, with a corresponding increased
T2r. However, there were
heterogeneous regions containing both increased and
decreased ADCr throughout the ischemic
volume, confirming previous
findings.30 Moreover,
between 3 and 5 days, 1 patient exhibited hypernormalized
ADCr, suggesting that progression of
ischemic damage is highly variable and depends on several
factors, such as location, duration, and mechanism of the
ischemic event.31 At
3 months, both ADCr and
T2r were elevated in the ISODATA-defined
volumes. Nonetheless, the multiparametric ISODATA segmentation
discriminated abnormal from normal tissue and detected their
heterogeneous distribution and revealed that in human
stroke, the concept of an infarcted core surrounded by potentially
viable ischemic tissue may not be valid
(Figures 3
and 4
).
The multiparametric ISODATA overcomes several
limitations of our previously reported tissue signature
model,6 19 32 33
as clearly described in part 1 of this
report.19 The integrated
ISODATA provides an objective classification of the tissue clusters
independent of time, with the defined volumes consisting of multiple
tissue classes of ischemic tissue being significantly
correlated with NIHSS score at each time point. Tong et
al8 reported a correlation
(r=0.67,
P=0.03) between acute DWI
volumes and NIHSS scores at 24 hours in 10 patients who were imaged at
hyperacute time points (<6.5 hours). The present study found a
similar result (r=0.72,
P<0.009) at 3 to 5 days.
However, to the best of our knowledge, our report for the first time
extends the correlation of clinical outcome determined by NIHSS score
with DWI, T2WI, and the integrated ISODATA volumes to several time
points after stroke. The acute (
12 hours) multiparametric
ISODATA volume had excellent correlation
(r=0.82,
P<0.009; n=10) with
the final 3-month NIHSS score, outperforming both the DWI and T2
volumes at each time point, which supported previous experimental
results.18 This study
demonstrates the advantages of using multiparametric MRI data
to identify ischemic tissue and to correlate the lesion with
the clinical status of the patient. Our data also support the concept
that a single MRI parameter is not sufficient to
characterize the status of the
tissue.6 32 In
addition, the power of the ISODATA methodology to discern different
regions of tissue damage within the lesion area not visible on
conventional MRI is illustrated. ISODATA has the advantage of utilizing
all the discriminating information implicitly available within the data
for segmentation.
Bernarding et al34 recently applied a supervised histogram-based methodology to multiparametric MR data to characterize ischemic tissue in 10 stroke patients at different time points ranging from 1 day to 4 months using DWI, ADC, T2WI, and T1WI in various combinations; longitudinal studies were not performed. Determination of normal tissue was accomplished interactively by drawing regions around surrounding clusters with the use of visualization and windowing techniques. They reported that at acute times after stroke, DWI should be included in the MR data set if T2WI or T1WI did not show any signal intensity changes. In addition, T1WI was needed to assist in the segmentation of normal tissue and, if hemorrhage was present in the brain, in the segmentation of ischemic tissue. This observation of the need to include DWI at early time points and T1WI for normal tissue differentiation is consistent with the findings of our studies.19 Taken together, their findings and our study demonstrate that multiparametric MRI and computer-assisted image processing provide a means for characterizing stroke in clinical applications.
Investigations are ongoing to incorporate other MRI parameters, such as perfusion-weighted imaging, into ISODATA. Recent reports have suggested that the combination of DWI and perfusion-weighted imaging may be useful in defining "tissue at risk."4 8 35 36 37 The addition of perfusion-weighted imaging into the ISODATA model may increase the segmentation of abnormal and normal tissue, including tissue at risk.
Conclusion
We have demonstrated that integration of
multiparametric MRI data in the ISODATA model can segment
ischemic tissue from normal tissue and that this segmentation
is highly correlated with the clinical status of the
patient.
| Appendix 1 |
|---|
|
|
|---|
N=5; the SD of
white matter:
S (in human brain, white matter
is the predominant tissue); the Euclidean distance between normal
tissue in brain:
C, ie, white and gray
matter; the maximum number of cluster pairs to lump together in 1
iteration: L=1; the maximum number of iterations: I=100; and the
cluster center constant:
j=0.25
jmax, where
jmax is the maximum element for each SD
vector. See part 119 for
complete details of
ISODATA.
| Acknowledgments |
|---|
Received August 14, 2000; revision received November 28, 2000; accepted December 20, 2000.
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H. P. Adams Jr, G. del Zoppo, M. J. Alberts, D. L. Bhatt, L. Brass, A. Furlan, R. L. Grubb, R. T. Higashida, E. C. Jauch, C. Kidwell, et al. Guidelines for the Early Management of Adults With Ischemic Stroke: A Guideline From the American Heart Association/American Stroke Association Stroke Council, Clinical Cardiology Council, Cardiovascular Radiology and Intervention Council, and the Atherosclerotic Peripheral Vascular Disease and Quality of Care Outcomes in Research Interdisciplinary Working Groups: The American Academy of Neurology affirms the value of this guideline as an educational tool for neurologists. Circulation, May 22, 2007; 115(20): e478 - e534. [Abstract] [Full Text] [PDF] |
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H. P. Adams Jr, G. del Zoppo, M. J. Alberts, D. L. Bhatt, L. Brass, A. Furlan, R. L. Grubb, R. T. Higashida, E. C. Jauch, C. Kidwell, et al. Guidelines for the Early Management of Adults With Ischemic Stroke: A Guideline From the American Heart Association/ American Stroke Association Stroke Council, Clinical Cardiology Council, Cardiovascular Radiology and Intervention Council, and the Atherosclerotic Peripheral Vascular Disease and Quality of Care Outcomes in Research Interdisciplinary Working Groups: The American Academy of Neurology affirms the value of this guideline as an educational tool for neurologists Stroke, May 1, 2007; 38(5): 1655 - 1711. [Abstract] [Full Text] [PDF] |
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S. K. Schiemanck, G. Kwakkel, M. W. M. Post, and A. J. H. Prevo Predictive Value of Ischemic Lesion Volume Assessed With Magnetic Resonance Imaging for Neurological Deficits and Functional Outcome Poststroke: A Critical Review of the Literature Neurorehabil Neural Repair, December 1, 2006; 20(4): 492 - 502. [Abstract] [PDF] |
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O. Wu, S. Christensen, N. Hjort, R. M. Dijkhuizen, T. Kucinski, J. Fiehler, G. Thomalla, J. Rother, and L. Ostergaard Characterizing physiological heterogeneity of infarction risk in acute human ischaemic stroke using MRI Brain, September 1, 2006; 129(9): 2384 - 2393. [Abstract] [Full Text] [PDF] |
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M. A. Jacobs, E. H. Herskovits, and H. S. Kim Uterine Fibroids: Diffusion-weighted MR Imaging for Monitoring Therapy with Focused Ultrasound Surgery--Preliminary Study Radiology, July 1, 2005; 236(1): 196 - 203. [Abstract] [Full Text] [PDF] |
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F. J. Rugg-Gunn, P. A. Boulby, M. R. Symms, G. J. Barker, and J. S. Duncan Whole-brain T2 mapping demonstrates occult abnormalities in focal epilepsy Neurology, January 25, 2005; 64(2): 318 - 325. [Abstract] [Full Text] [PDF] |
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C. S. Kidwell, J. R. Alger, and J. L. Saver Evolving Paradigms in Neuroimaging of the Ischemic Penumbra Stroke, November 1, 2004; 35(11_suppl_1): 2662 - 2665. [Abstract] [Full Text] [PDF] |
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E. J. Burton, R. A. Kenny, J. O'Brien, S. Stephens, M. Bradbury, E. Rowan, R. Kalaria, M. Firbank, K. Wesnes, and C. Ballard White Matter Hyperintensities Are Associated With Impairment of Memory, Attention, and Global Cognitive Performance in Older Stroke Patients Stroke, June 1, 2004; 35(6): 1270 - 1275. [Abstract] [Full Text] [PDF] |
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C. S. Kidwell, J. R. Alger, and J. L. Saver Beyond Mismatch: Evolving Paradigms in Imaging the Ischemic Penumbra With Multimodal Magnetic Resonance Imaging Stroke, November 1, 2003; 34(11): 2729 - 2735. [Abstract] [Full Text] [PDF] |
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L. C. Shih, J. L. Saver, J. R. Alger, S. Starkman, M. C. Leary, F. Vinuela, G. Duckwiler, Y. P. Gobin, R. Jahan, J. P. Villablanca, et al. Perfusion-Weighted Magnetic Resonance Imaging Thresholds Identifying Core, Irreversibly Infarcted Tissue Stroke, June 1, 2003; 34(6): 1425 - 1430. [Abstract] [Full Text] [PDF] |
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M. Fisher Recommendations for Advancing Development of Acute Stroke Therapies: Stroke Therapy Academic Industry Roundtable 3 Stroke, June 1, 2003; 34(6): 1539 - 1546. [Abstract] [Full Text] [PDF] |
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H. P. Adams Jr, R. J. Adams, T. Brott, G. J. del Zoppo, A. Furlan, L. B. Goldstein, R. L. Grubb, R. Higashida, C. Kidwell, T. G. Kwiatkowski, et al. Guidelines for the Early Management of Patients With Ischemic Stroke: A Scientific Statement From the Stroke Council of the American Stroke Association Stroke, April 1, 2003; 34(4): 1056 - 1083. [Full Text] [PDF] |
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P. D. Mitsias, M. A. Jacobs, R. Hammoud, M. Pasnoor, S. Santhakumar, N. I.H. Papamitsakis, H. Soltanian-Zadeh, M. Lu, M. Chopp, and S. C. Patel Multiparametric MRI ISODATA Ischemic Lesion Analysis: Correlation With the Clinical Neurological Deficit and Single-Parameter MRI Techniques Stroke, December 1, 2002; 33(12): 2839 - 2844. [Abstract] [Full Text] [PDF] |
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S. Warach Tissue Viability Thresholds in Acute Stroke: The 4-Factor Model Stroke, November 1, 2001; 32(11): 2460 - 2461. [Full Text] [PDF] |
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M. A. Jacobs, Z. G. Zhang, R. A. Knight, H. Soltanian-Zadeh, A. V. Goussev, D. J. Peck, and M. Chopp A Model for Multiparametric MRI Tissue Characterization in Experimental Cerebral Ischemia With Histological Validation in Rat : Part 1 Stroke, April 1, 2001; 32(4): 943 - 949. [Abstract] [Full Text] [PDF] |
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