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(Stroke. 2007;38:3230.)
© 2007 American Heart Association, Inc.
Original Contributions |
From the Department of Neurosurgery (P.G., Y.L.), First Teaching Hospital, Jilin University, Jilin, China, and the Neurochemistry Laboratory of Brain Injury and Ischemia (P.G., Y.L., C.L.L., B.H.), Department of Neurology, University of Miami School of Medicine, Miami, Fla.
Correspondence to Dr Bingren Hu, Department of Neurology, University of Miami School of Medicine, PO Box 16960, Miami, FL 33136. E-mail bhu{at}med.Miami.edu
| Abstract |
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Methods— Proteasome peptidase activity and proteasome subcellular redistribution and assembly were studied by peptidase activity assay, Western blot analysis, and size-exclusion chromatography.
Results— Proteasome peptidase activity, as determined with the peptide substrate succinyl-LLVY-7-amino-4-methylcoumarin, was moderately decreased, and the 26S proteasome was disassembled during the early period of reperfusion after transient brain ischemia. Furthermore, the proteasome subunits, particularly the 19S components, were deposited into the protein aggregate-containing fraction after an episode of transient cerebral ischemia.
Conclusions— These results clearly demonstrate that after an episode of brain ischemia, proteasomes are disassembled and aggregated and thus fail to function normally. Deposition of proteasomes into protein aggregates may also indicate that proteasomes attempt to degrade ubiquitin-conjugated proteins (ubiproteins) overproduced after brain ischemia. However, ubiproteins are too numerous to be degraded and trap some of the proteasomes into their aggregates after brain ischemia.
Key Words: brain ischemia/reperfusion delayed neuronal death protein aggregation protein misfolding proteosomes ubiquitin size-exclusion chromatography
| Introduction |
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Neuronal death after a brief episode of brain ischemia does not occur immediately but takes place after 2 to 3 days of reperfusion, the so-called delayed neuronal death.3 Delayed neuronal death has been intensively studied because this type of neuronal death provides a window of opportunity for studying ongoing molecular processes before neuronal death after brain ischemia. During the delayed period, cerebral blood flow, cellular ATP, and ionic homeostasis gradually recover, and most neurons destined to die appear normal under light microscopy (LM).4 However, under electron microscopy (EM), a dominant pathologic event is the continuous accumulation of ubiquitin-conjugated protein (ubiprotein) aggregates, which takes place mainly in vulnerable ischemic neurons from the onset of reperfusion onward until delayed neuronal death occurs after 2 to 3 days of reperfusion.5–9
To study whether overproduction of ubiproteins after brain ischemia is due to proteasome dysfunction, we investigated proteasome activity, disassembly, and deposition into protein aggregates after brain ischemia. This study suggests that unfolded proteins are too numerous to be degraded by proteasomes, but they trap the "escorting" proteasomes into their aggregates after brain ischemia.
| Materials and Methods |
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EM and LM
Tissue sections were stained by the conventional osmium-uranyl-lead method for EM and with celestine blue and acid fuchsin for LM.8 In brief, coronal brain sections were cut consecutively with a vibratome at a thickness of 150 µm for EM and at 30 µm for LM. The EM brain sections were postfixed with 4% glutaraldehyde for 1 hour and then with 1% OsO4 for 2 hours in 0.1 mol/L cacodylate buffer (pH 7.4). EM brain sections were stained with 1% aqueous uranyl acetate overnight, dehydrated in an ascending series of ethanols followed by dry acetone, and then embedded in Durcopan ACM. Ultrathin sections (0.1 µm) were cut, stained with 3% lead citrate, and examined with a Zeiss EM (Germany). The vibratome brain sections (30 µm) were stained with celestine blue and acid fuchsin and examined by LM. Neuronal histopathology was determined according to the method of Smith et al.10
Isolation of Proteasomes by Size-Exclusion Chromatography
The dorsal neocortical tissues from frozen coronal brain sections were dissected and then weighted in a –12°C glove box according to a method described previously.5 The neocortical tissues were homogenized with a Dounce homogenizer (50 strokes) in 10 volumes of ice-cold extraction buffer containing 20% glycerol, 10 mmol/L Tris-base/HCl, pH 7.5, 1 mmol/L EDTA, 4 mmol/L dithiothreitol, and 2 mmol/L ATP. Homogenates were centrifuged at 17 000g at 4°C for 10 minutes to obtain pellet (often referred to as P1+P2) and supernatant (S2) fractions.7 The pellet fractions were suspended in extraction buffer. The protein contents in the S2 fractions were measured and adjusted to 4 mg/mL. Size-exclusion chromatographic separation of proteasome subcomplexes was carried out with a fast protein liquid chromatography (FPLC) system on a Superose 6 column (Pharmacia, Uppsala, Sweden). The column was equilibrated with the same extraction buffer at a flow rate of 0.2 mL/min. The supernatant (S2) fraction was passed through a 0.2-µm filter and loaded into the FPLC sample loop in a volume of 400 µL. The proteasomal fractions were eluted with extraction buffer at a flow rate of 0.2 mL/min. Absorbance at the UV wavelength of 280 nm in each fraction was monitored. Forty 0.6-mL fractions were collected. In separate experiments, the molecular size markers albumin (66 kDa, 25 mg/mL), alcohol dehydrogenase (150 kDa, 12.5 mg/mL), apoferritin (443 kDa, 25 mg/mL), thyroglobulin (670 kDa, 20 mg/mL), and dextran blue (2000 kDa, 5 mg/mL) (Sigma-Aldrich, St. Louis, Mo) were loaded onto the FPLC column for calculation of the molecular sizes of the proteasome complexes. Aliquots of all fractions (20 µL each) were assayed for proteasome peptidase activity with the succinyl-LLVY-7-amino-4-methylcoumarin (AMC) substrate. Aliquots of 60 µL of each fraction were also analyzed by Western blotting.
Proteasome Peptidase Activity
Ten microliters (1 µg/µL) of each freshly made supernatant (S2) or pellet (P1+P2) fraction was incubated in a 96-well plate at 37°C for 30 minutes with 10 µL of 300 µmol/L of succinyl-LLVY-AMC substrate and 85 µL of assay buffer (20 mmol/L Tris-HCl, pH 7.5, and 20% glycerol, with or without 30 µmol/L lactacystin). For proteasome peptidase activity assay of the FPLC-eluted fractions (see previous sections), 20-µL aliquots of all chromatographic fractions were incubated in a 96-well plate at 37°C for 30 minutes with 10 µL (300 µmol/L) of succinyl-LLVY-AMC and 75 µL of assay buffer containing 50 mmol/L Tris-HCl, pH 7.5, 1 mmol/L dithiothreitol, 5 mmol/L MgCl2, 10 µg/mL ovalbumin, and a freshly added ATP-regenerating system (2 mmol/L ATP, 20 mmol/L phosphocreatine, and 200 µg/mL creatine phosphokinase). Release of fluorescent AMC was measured with a spectrofluorometer (Perkin-Elmer Life and Analytical Sciences, Inc, Wellesley, Mass) at 440 nm with an excitation wavelength of 380 nm.
Subcellular Fractionation
The dorsal neocortical tissue (
50 mg) was homogenized with a Dounce homogenizer (50 strokes) in 8 volumes of ice-cold homogenization buffer containing 50 mmol/L Tris-HCl, pH7.5, 20 µmol/L ATP, 5 mmol/L MgCl2, 1 mmol/L dithiothreitol, and 20% glycerol. The homogenate was centrifuged at 17 000g for 10 minutes at 4°C to obtain pellet (P1+P2) and supernatant (S2) fractions. The supernatant fraction (S2) was further centrifuged at 165 000g for 60 minutes at 4°C to obtain cytosolic (S3) and microsomal (P3) fractions. The pellet (P1+P2) fractions were suspended in homogenization buffer containing 1% Triton-X100 (TX) and 400 mmol/L KCl, sonicated 3 times each for 5 seconds, washed on a shaker for 1 hour at 4°C, and then centrifuged at 20 000g at 4°C for 10 minutes to obtain TX-soluble and -insoluble fractions. The protein concentration in subcellular fractions was determined by the microbicinchoninic acid method (Pierce, Rockford, Ill).
Western Blot Analysis
Western blot analysis was carried out by 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) according to a method described previously.7 Samples for Western blotting contained 20 µg protein in the TX-insoluble and -soluble fractions, as well as in the cytosolic (S3) and microsomal (P3) fractions. The blot membranes were probed with antibodies against ubiquitin (Cell Signaling, Beverly, Mass), the proteasomal 20S
-1 and 19S-S10B subunits (Affiniti Research Products Inc, Plymouth Meeting, Pa), and actin-ß (Sigma, St. Louis, Mo). The blots were developed with an ECL detection system (Cell Signaling, Beverly, Mass) and then exposed to Kodak film to so that the protein bands on the films were not saturated. The optical densities of protein bands on the films were quantified by Kodak 1D gel analysis software.
| Results |
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20% to 40% of dorsolateral neocortical neurons after 72 hours of reperfusion, as demonstrated by EM (Figure 1A, 72 hours) and LM (Figure 1B, 72 hours). Delayed neuronal death also took place in almost all CA1 neurons and a few CA3 and DG neurons after 20 minutes of ischemia in this 2VO ischemia model (data not shown). Under EM, ischemic dead neocortical neurons at 72 hours of reperfusion showed clumped chromatin in the nucleus and amorphous organelles in the cytoplasm (Figure 1A, 72 hours, arrows). Under LM, ischemic dead neurons revealed a shrunken, acidophilic cytoplasm, as well as dark and shrunken or polygonal nuclei (Figure 1B, 72 hours, arrows). All of these results are consistent with previous studies.7,10
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Protein Ubiquitination After Brain Ischemia
When proteins become aggregated, their TX solubility decreases dramatically.12,13 Therefore, TX-insoluble pellet fractions were prepared for Western blot analysis of ubiprotein deposition into protein aggregate–containing fractions (Figure 2). The neocortical tissue samples were obtained from sham-operated rats and rats subjected to 20 minutes of 2VO cerebral ischemia followed by 0.5, 4, 24, and 72 hours of reperfusion. Ubiproteins were drastically and continuously accumulated in TX-insoluble pellet fractions from 0.5 to 24 hours of reperfusion (Figures 2A and 2B). This suggests that protein ubiquitination and aggregation were ongoing events during the reperfusion period before delayed neuronal death took place after brain ischemia. By comparison with the pellet fractions, ubiproteins were increased only slightly, if at all, in the tissue supernatant (S2) fractions after ischemia,14 consistent with the fact that ubiproteins were either aggregated or associated with subcellular structures.6 By 72 hours of reperfusion, ubiproteins were reduced drastically (Figures 2A and 2B), most probably because delayed neuronal death had occurred in some neocortical neurons. This agrees with the previous finding that ubiproteins are present only in living neurons after brain ischemia.5
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Inhibition of Proteasome Peptidase Activity After Brain Ischemia
To study whether overproduction of ubiprotein aggregates in living neurons after brain ischemia is a consequence of proteasome inhibition, we analyzed proteasome peptidase activity after brain ischemia. Proteasome peptidase activity was determined with the succinyl-LLVY-AMC substrate in freshly made brain samples from the same rat tissues used for Western blotting of ubiproteins, as shown in Figure 2. Proteasome peptidase activity in the supernatant (S2 or tissue lysates; Figure 3, white bars) and pellets (Figure 3, black bars) was calculated by subtracting lactacystin-insensitive (or nonproteasome) peptidase activity from total peptidase activity. (Lactacystin is a specific inhibitor of the 26S proteasome.) The proteasome peptidase activity per microgram of sample protein was
60-fold more active in the tissue supernatant (Figure 3, white bars) than in the pellet fractions (Figure 3, black bars), suggesting that the proteasomes in tissue lysates were the major active forms. There was only an
20% to 30% reduction in proteasome activity from 30 minutes of reperfusion onward after transient cerebral ischemia (Figure 3).
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Deposition of Proteasomal Subunits Into Protein Aggregates After Brain Ischemia
We next investigated whether accumulated ubiproteins trapped proteasomal components into protein aggregates by using the same tissue samples as those for Western blotting of ubiproteins shown in Figure 2. TX-insoluble and -soluble fractions, as well as cytosolic (S3) and microsomal (P3) fractions, were immunoblotted with antibodies against 20S
-1 and 19S-S10B. Proteasomal subunit 20S
-1 was highly accumulated in TX-insoluble fractions at 30 minutes of reperfusion but gradually declined thereafter (Figures 4A and 4B). In comparison, 19S-S10B 40/42-kDa subunits were continuously accumulated in TX-insoluble fractions, particularly in the later periods of reperfusion (Figures 4C and 4D). Correspondingly, these proteasomal subunits were decreased at 0.5 to 4 hours of reperfusion in the cytosolic (S3) fraction. The proteasome 20S
-1 subunit rebounded to above control levels in the cytosolic fraction after 4 hours of reperfusion (Figures 4C and 4D). These proteasomal subunits were virtually unchanged in the microsomal fractions (P3) and TX-soluble fractions after brain ischemia (data not shown). Equal amounts of protein content among the samples were loaded onto the SDS-PAGE system for Western blot analysis. In addition, actin-ß, used as an endogenous protein loading control, was not significantly altered among samples after brain ischemia (Figure 4). These results suggested that proteasome subunits, particularly the 19S components, were deposited into the protein aggregate–containing fractions as a result of transient ischemia.
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Disassembly of Proteasomes After Brain Ischemia
We next analyzed whether inhibition of proteasomal peptidase activity was due to proteasomal disassembly. The 26S, 20S, and 19S proteasomal subcomplex–containing fractions were separated by size-exclusion chromatography on a Superose 6 FPLC column. These fractions were then identified by proteasome peptidase activity (Figure 5A) and immunoblotting of proteasomal subunits (Figure 5B). Proteasome succinyl-LLVY-AMC–hydrolyzing peptidase activity was measured in chromatographic fractions, and the graphs were smoothed with the Microsoft Excel program to reflect the continuous nature of chromatography (Figure 5A). Proteasomal peptidase activity in sham-operated control brains showed the typical peaks: a main peak located at the
1500-kDa fractions (fractions 18 to 22), representing 26S proteasome activity, and a shoulder peak (Figure 5A, solid line).15 Proteasome peptidase activity declined in brains subjected to 20 minutes of brain ischemia followed by 30 minutes and 24 hours of reperfusion (Figure 5A, dashed lines). Immunoblotting of proteasomal subunits in the chromatographic fractions indicated that the main peak activity was situated in the 26S proteasome fractions because they contained both proteasomal 20S and 19S subunits, followed by 20S and 19S proteasomal peaks, respectively (Figure 5B, immunoblot panels). The antibody against 20S
-1 also recognized an unknown protein band lower than the 20S
-1 band in fractions 38 to 40 (Figure 5B, immunoblot panels, arrows).
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Quantitative analysis of the ratio of 20S
-1 subunit immunoblot intensities to the 26S proteasome (fractions 18 to 22) and 20S proteasomal subcomplex (fractions 23 to 28) chromatographic peaks suggested that 20S
-1 was significantly shifted from the 26S peak toward the 20S peak at 30 minutes of reperfusion, whereas the ratio change was insignificant at 24 hours of reperfusion (Figure 5C). The 19S-S10B peak was shifted insignificantly from the 26S proteasome peak (fractions 18 to 24) to the 19S peak (fractions 29 to 35) at 30 minutes of reperfusion (Figure 5C). This was probably because of either a low 19S-S10B content in the 19S subcomplex or 19S-S10B deposition into the pellet fraction during the early period of reperfusion (Figure 4). These results indicated that 26S proteasomal 20S
-1 was significantly disassembled into its subunits during the early period of reperfusion after brain ischemia.
| Discussion |
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Inhibition of Proteasomal Peptidase Activity
Succinyl-LLVY-AMC–hydrolyzing proteasomal peptidase activity was examined previously in tissue lysates from the gerbil cortex after 10 minutes of forebrain ischemia.16 Proteasome peptidase activity was transiently decreased by
50% and then returned to control levels after 1 hour of reperfusion. Subsequently, it was reported that inhibition of proteasome peptidase activity failed to recover in the vulnerable CA1 region after 30 minutes of forebrain ischemia in gerbils.17 Asai et al17 further suggested that the ATP-dependent formation of the active 26S proteasome was severely impaired in ischemic vulnerable neurons. These previous studies examined proteasomal peptidase activity in tissue lysates (S2 fraction) but discarded the pellet fractions from analysis. As discussed later, the pellet fractions contained proteasome aggregates. The present study is in agreement with previous studies showing that proteasomal peptidase activity is moderately reduced in the supernatant fractions after 20 minutes of ischemia in the rat 2VO ischemia model. This study further demonstrates proteasomal deposition into detergent-insoluble protein aggregate-containing fractions (Figure 4) and proteasomal disassembly into proteasomal subunits in the supernatants (Figure 5).
The present study demonstrated that reduction of proteosome succinyl-LLVY-AMC–hydrolyzing peptidase activity was moderate,
20% to 30%, in neocortical tissue lysates during reperfusion (Figure 3). This is inconsistent with the drastic accumulation of ubiproteins in vivo, which indicates that proteasomes in vivo are incapable of degradation of ubiproteins in postischemic neurons (Figure 2). This discrepancy may be due to the fact that peptidase activity measured in vitro with a small peptide substrate does not represent the total activity of whole proteasome degradation of polyubiquitin chain-conjugated proteins (polyubiproteins) in vivo. The molecular weights of polyubiproteins are mostly >50 kDa (Figure 2). To degrade polyubiproteins, the 20S proteasomes must cooperate with the 19S proteasomes that govern polyubiprotein movement into and out of the 20S catalytic chambers.18 To enter the 20S proteasome catalytic chambers, polyubiproteins must be unfolded and then de-ubiquitinated by the 19S proteasomal subunit in an ATP-dependent manner. The peptidase activity, measured by the current and previous studies with the tetrapeptide succinyl-LLVY-AMC substrate, requires little unfolding and de-ubiquitination effort from the 19S proteasome subcomplex and thus, reflects only the peptidase portion of the 26S proteasome function. Therefore, despite the fact that 19S subunits were aggregated and disassembled, proteoasome peptidase activity was reduced only moderately.
The moderate reduction of peptidase activity after transient cerebral ischemia may also result from slight deposition of proteasome subunits into the TX-insoluble fraction, whereas the majority of proteasomes remain active. Therefore, a combination of accelerated production of ubiprotein aggregates and moderate reduction of proteasome activity may account for the drastic accumulation of ubiproteins in neocortical tissues in vivo after ischemia.
Proteasomal Disassembly and Aggregation
The 26S proteasome complex is formed by assembly of 20S and 19S subcomplexes in an ATP-dependent fashion.1 Neuronal ATP is completely depleted within a few minutes after the onset of brain ischemia and then gradually recovers to
80% of control levels at 30 minutes of reperfusion in the 2VO model.4 This may explain the results of the current study showing that 26S proteasomes are transiently disassembled during the early period of reperfusion. Because only the 26S proteasome is capable of degrading polyubiproteins in an ATP-dependent fashion,15 disassembly of the 26S proteasome may contribute to the accumulation of ubiproteins during the early postischemic phase.
Virtually all unfolded proteins in cells expose their toxic hydrophobic segments and must be escorted by molecular "chaperones." We have previously demonstrated that molecular chaperones are irreversibly malfunctioning, leading to large amounts of unfolded proteins without chaperone protection in postischemic neurons.7–9 Without chaperone protection, unfolded polypeptides and their associated cellular machinery remain abnormal (toxic) and must be eliminated by the proteasome system after brain ischemia. However, ubiproteins after brain ischemia are too numerous to be degraded by the compromised proteasomes; they eventually aggregate after an episode of brain ischemia.
Proteasomal Dysfunction and Delayed Neuronal Death
The CA1 and DG tissue samples were not used in the present study because their amounts are insufficient for chromatographic preparation of proteasomal fractions. The microdissected CA1 or DG region from a frozen brain weighs
10 mg per rat (Hu et al, 2000, unpublished observations). To isolate proteasomes by chromatography,
30 mg is needed for each sample preparation. For this entire study,
3 sample preparations from each brain were prepared. The dorsal cortical tissue from each rat weighs
90 mg. For this reason, we used cortical tissue for sample preparation. To compensate for less damage in cortical neurons after transient cerebral ischemia, we used 20 minutes of ischemia, which leads to
20% to 40% of dorsal neocortical neurons that undergo delayed neuronal death. In our previous study, we have shown that EM-visible protein aggregates are present mostly in neurons that undergo delayed neuronal death after ischemia.6 Therefore, deposition of proteasome subunits into protein aggregates is likely to occur in neocortical neurons vulnerable to ischemia.
A key question is whether proteasome dysfunction and protein aggregation during the early period of reperfusion eventually lead to delayed neuronal death after brain ischemia. There is solid evidence demonstrating that defects in the ubiquitin-proteasome pathway induces protein aggregation and neuronal death virtually in all pathologic conditions.19,20 Conversely, enhancing proteasomal function by overexpression of proteasomal proteolytic subunits or ubiquitin ligases protects cells from lethal stress.21 We have previously proposed that protein unfolding and aggregation after brain ischemia reflect a quantitative imbalance between the amounts of toxic unfolded proteins and the capacity of protein quality control systems to eliminate them.7–9 Therefore, this study provides new evidence that ischemia-induced proteasome dysfunction contributes, at least in part, to delayed neuronal death after brain ischemia.
| Acknowledgments |
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This work was supported by National Institutes of Health grants NS040407 and NS36810.
Disclosures
None.
Received March 6, 2007; revision received April 23, 2007; accepted May 18, 2007.
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